2000-present. Senior Researcher, IITP RAS

Publications:

Mazin P.V, Gelfand M.S, Mironov A.A, Rakhmaninova A.B, Rubinov A.R, Russell R.B, Kalinina O.V. An automated stochastic approach to the identification of the protein specificity determinants and functional subfamilies. Algorithms Mol Biol. 2010, 5: 29. PubMed  PDF

V. Ramensky, A. Sobol, N. Zaitseva, A. Rubinov, V. Zosimov. A novel approach to local similarity of protein binding sites substantially improves computational drug design results. Proteins. 2007, 69: 349-57. PubMed  PDF

S. Nikitin, N. Zaitseva, O. Demina, V. Solovieva, E. Mazin, S. Mikhalev, M. Smolov, A. Rubinov, P. Vlasov, D. Lepikhin, D. Khachko, V. Fokin, C. Queen, V. Zosimov. A very large diversity space of synthetically accessible compounds for use with drug design programs. J Comput Aided Mol Des. 2005, 19: 47-63. PubMed  PDF

String Noninclusion Optimization Problems. SIAM Journal on Discrete Mathematics, 1998, 11(3):456-467 (with Timkovsky V.G.)

Rubinov AR, Gelfand MS. Reconstruction of a string from substring precedence data. J Comput Biol. 1995, 2(2):371-81. PubMed

Razgulyaev O, Rubinov A, Gelfand M, Chetverin A. Sequencing potential of nested strand hybridization. J Comput Biol. 1995, 2(2):383-95. PubMed

Rubinov AR, Kendys EV, Makarov VM, Tishkin EM. Optimal distribution sorting. "Translations of Mathematical Monographs Series" of AMS, Selected Topics in Discrete Mathematics. 1994, ser.2, vol. 158, pp. 175-183.

Rubinov AR. The optimal oligonucleotide linker. Abstr. of International Congress on Computer Systems and Applied Mathematics, St. Petersburg, 1993, p. 165-166.

Rubinov AR, Timkovsky VG. Non-similarity combinatorial problems. Biosystems. 1993, 30(1-3):81-92 PubMed

Conferences

V. Ramensky, A. Rubinov, N. Zaitseva, V. Zosimov. Computational drug design based on a novel approach to local similarity of protein binding sites. Helmholtz Russian-German Workshop on Systems Biology. (Moscow, Russia, February 2008)

V.E. Ramensky, N.I. Zaitseva, A.R. Rubinov, V.V. Zosimov. Computational drug design based on a novel approach to local similarity of protein binding sites. Fourth International Symposium on Computational Methods in Toxicology and Pharmacology Integrating Internet Resources. (Moscow, Russia, September, 2007)

V.E. Ramensky, A. Sobol, N.I. Zaitseva, A.R. Rubinov, V.V. Zosimov. A novel approach to local similarity of protein binding sites and its application to computational drug design. 3rd Int. Moscow Conference on Computational Molecular Biology MCCMB’07 (Moscow, Russia, July 2007).