Публикации:

Belushkin AA, Vinogradov DV, Gelfand MS, Osterman AL, Cieplak P, Kazanov MD. Sequence-derived structural features driving proteolytic processing. Proteomics. 2013 Nov 13. PubMed 

  Cipriano M.J., Novichkov P.N., Kazakov A.E., Rodionov D.A., Arkin A.P., Gelfand M.S., Dubchak I. RegTransBase--a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes. BMC Genomics 2013 14(213. PubMed  PDF

Vinogradov D.V., Tsoi O.V., Zaika A.V., Lobanov A.V., Turanov A.A., Gladyshev V.N., Gel'fand M.S. [Draft macronuclear genome of a ciliate Euplotes crassus]. Mol Biol (Mosk) 2012 46(2): 361-366. PubMed  PDF

Д. В. Виноградов, О. В. Цой, А. В. Заика, А. В. Лобанов, А. А. Туранов, В. Н. Гладышев, М. C. Гельфанд. Предварительная версия генома макронуклеуса инфузории Euplotes crassus. Молекулярная биология. 2012, 46(2): 361-366. PubMed  PDF

 Logacheva M.D, Kasianov A.S, Vinogradov D.V, Samigullin T.H, Gelfand M.S, Makeev V.J, Penin A.A. De novo sequencing and characterization of floral transcriptome in two species of buckwheat (Fagopyrum). BMC Genomics. 2011, 12: 30. PubMed  PDF

Kazakov AE, Cipriano MJ, Novichkov PS, Minovitsky S, Vinogradov DV, Arkin A, Mironov AA, Gelfand MS, Dubchak I. RegTransBase--a database of regulatory sequences and interactions in a wide range of prokaryotic genomes. Nucleic Acids Res. 2007, D407-12. PubMed  PDF

Vinogradov D.V, Mironov A.A. ProMult: prediction of the exon-introns tructure by spliced alignment with several proteins. Biophysics (Moscow). 2003, 48 Suppl. 1 S68-S70 PDF

Конференции:

The 8th Int. Conf. on Bioinformatics of Genome Regulation and Structure / Systems Biology. Novosiborsk, Russia, 25-29.06.2012
• M.D.Logacheva, R.A.Sutormin, S.A.Naumenko, N.V.Demidenko, D.V.Vinogradov, M.S.Gelfand, A.A.Penin. A draft genome sequence of tartary buckwheat Fagopyrum tataricum

Информационные технологии и системы ИТиС’11. Геленджик, 02-07.10.2011
• Д.В.Виноградов, М.Логачева, М.С.Гельфанд. Анализ SNP в четырех транскриптомах рода Fagopyrum (постер)

S.Denisov, R.Nurtdinov, D.Vinogradov, A.Kazakov, G.Kovaleva, M.Gelfand. RASDB – regulation of alternative splicing database. Int. Moscow Conference on Computational Molecular Biology MCCMB’07 (Moscow, Russia, July 2007) p. 69 (poster)

Д.Виноградов. Учет распределения расстояний при поиске кластеров сайтов связывания транскрипционных факторов. Информационные технологии и системы ИТиС’07 (Звенигород, сентябрь 2007). (стенд) с. 218-219

Vinogradov DV. ProFrame – a Tool to Find Exon-Intron Structure. Int. Moscow Conference on Computational Molecular Biology MCCMB’03 (Moscow, Russia, July 2003) p.231-232. (poster)

Vinogradov DV, Mironov AA. SiteProb: yet another algorithm to find regulatory signals in nucleotide sequences. BGRS’2002, 3rd Int. Conf. on Bioinformatics of Genome Regulation and Structure. (Novosibirsk, July 2002) 1: 28-30 (poster)